Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs3767705 chr1:36602044 A/T 6.45E-5 177 19.47 12.2 16.27 KM Plot
PAAD rs3767708 chr1:36610722 C/A 0.000109 178 19.73 12.35 16.17 KM Plot
PAAD rs3771291 chr2:128527705 C/A 4.65E-10 178 15.72 12.5 2.2 KM Plot
PAAD rs3772173 chr3:170078232 C/T 7.35E-5 177 7.9 15.27 15.77 KM Plot
PAAD rs377332789 chr17:12912557 CTACT/C 0.000141 178 16.08 15 7.87 KM Plot
PAAD rs3778507 chr6:44896803 G/A 9.64E-5 178 16.22 16.12 11.98 KM Plot
PAAD rs3798232 chr6:116317444 C/T 2.31E-5 178 22.2 13.13 17.15 KM Plot
PAAD rs3805607 chr5:127477418 T/C 0.000165 177 16.18 13.95 7.87 KM Plot
PAAD rs3808354 chr7:1133171 G/T 6.88E-6 175 15.42 16.1 4.42 KM Plot
PAAD rs3824134 chr8:1820965 T/C 4.24E-5 173 16.15 13.13 6.02 KM Plot
PAAD rs3829078 chr9:35679251 A/G 1.79E-6 171 15.43 17.5 3.43 KM Plot
PAAD rs3837823 chr17:12875000 GTGTT/G 0.000106 175 16.13 11.13 7.97 KM Plot
PAAD rs3840960 chr21:48055165 TG/T 5.56E-5 171 7.47 15.53 15.4 KM Plot
PAAD rs3841909 chr2:70502811 T/TTCTG 0 178 15.37 17.4 1.03 KM Plot
PAAD rs3887690 chr17:55321954 G/A 1.67E-6 175 15.4 18.17 3.43 KM Plot